Multi-Omics

Tutorials that span more than one modality — converting between bulk RNA-seq, single-cell RNA-seq, and spatial transcriptomics, or otherwise integrating across omics layers.

Bulk ↔ Single-cell ↔ Spatial

• Bulk RNA-seq generate ‘interrupted’ cells to interpolate scRNA-seq
• Bulk RNA-seq to Single RNA-seq
• Single RNA-seq to Spatial RNA-seq

Microbe ↔ Metabolite

• Paired microbe ↔ metabolite integration (Franzosa 2019 IBD)