omicverse.single.Fate

omicverse.single.Fate(adata: AnnData, pseudotime: str)

Adaptive ridge-regression framework for pseudotime-associated gene discovery.

Parameters:

• adata (anndata.AnnData) – AnnData object containing pseudotime in obs and gene expression features.

• pseudotime (str) – adata.obs key storing pseudotime values.

Returns:

Initializes Fate model state.

Return type:

None

Examples

>>> # Initialize Fate analysis