omicverse.micro.ilr

Contents

omicverse.micro.ilr#

omicverse.micro.ilr(adata, layer_out='ilr', copy=False)[source]#

ILR transform — orthonormal coordinate system after closure removal.

Stores an (n_samples × (n_features - 1)) matrix in obsm[layer_out] (not layers because ILR changes dimensionality).

Return type:

AnnData