omicverse.utils.biocontext.query_string

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omicverse.utils.biocontext.query_string#

omicverse.utils.biocontext.query_string(protein_symbol, species=9606, min_score=None)[source]#

Query STRING for protein-protein interactions.

Parameters:

  • protein_symbol (str) – Protein symbol.

  • species (int) – NCBI taxonomy ID. Default 9606 (human).

  • min_score (float, optional) – Minimum interaction score (0-1).

Returns:

STRING interaction data.

Return type:

dict

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