omicverse.micro.Ordinate

omicverse.micro.Ordinate(adata: ad.AnnData, dist_key: str = 'braycurtis')

Reduce a sample × sample distance matrix to 2-D / 3-D coords.

Parameters:

• adata – AnnData with a distance matrix already computed by Beta.run() (stored in adata.obsp[dist_key]).

• dist_key (default: 'braycurtis') – Key into adata.obsp. Defaults to 'braycurtis'.