omicverse.alignment.fetch_silva

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omicverse.alignment.fetch_silva#

omicverse.alignment.fetch_silva(db_dir=None, overwrite=False)[source]#

Alias for fetch_sintax_ref('silva_16s_v123', db_dir=...). :rtype: str

Warning

silva_16s_v123 dates from 2015. The current SILVA release is v138.1+ (2020). For publication-grade work, export a newer SILVA release to SINTAX format yourself and pass it to omicverse.alignment.vsearch.sintax() via db_fasta=. A DeprecationWarning is emitted each time this alias is called.

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