omicverse.utils.biocontext.query_uniprot

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omicverse.utils.biocontext.query_uniprot#

omicverse.utils.biocontext.query_uniprot(protein_id=None, protein_name=None, gene_symbol=None, species='9606', include_references=False)[source]#

Query UniProt protein information.

Provide at least one of protein_id, protein_name, or gene_symbol.

Parameters:

  • protein_id (str, optional) – UniProt accession (e.g. 'P04637').

  • protein_name (str, optional) – Protein name to search.

  • gene_symbol (str, optional) – Gene symbol (e.g. 'TP53').

  • species (str) – NCBI taxonomy ID. Default '9606' (human).

  • include_references (bool) – Include literature references.

Returns:

UniProt protein record.

Return type:

dict

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