# Microbiome

Tutorials covering 16S rRNA amplicon analysis — end-to-end from raw paired-end
FASTQs to AnnData (samples × ASVs with taxonomy), using the real tool wrappers
under `ov.alignment` (cutadapt, vsearch UNOISE3 + SINTAX).

```{toctree}
:maxdepth: 1

../Tutorials-microbiome/t_16s_amplicon
../Tutorials-microbiome/t_16s_phylogeny
../Tutorials-microbiome/t_16s_dada2
../Tutorials-microbiome/t_16s_da_comparison
../Tutorials-microbiome/t_16s_meta_analysis
```